Will be handled in #122

* Make the clay model work on lightning cli

* Update Mean & std for larger chunk of data

* Update model & trainer to work on multi gpu setup

* Fix logging images to wandb

* Add specification docs

* Add trainer details

* Add streamlit UI to test the embeddings (#108)

UI supports vector search & arithmetic for embeddings generated from CLAY.

---------

Co-authored-by: SRM <soumya@developmentseed.org>

* Use rasterio.plot to show images & filter by year, tile & idx

* Fix half:0 error by not explicitly setting float16 to cube[pixels]

* Add documentation to create the pixel reconstruction from the model

* Add documention explaining location embeddings

* Add shuffle as an argument to CLAY

* Add documentation to showcase interpolation between images in embedding space

* Adapt data pipeline to accept custom date range and local path for storing tiles

* Add example script to run clay over custom AOI.

* add sections to TOC

* basic use from root README

* Install from root REAMDE

* how to build/preview docs

* more narrative on release notes

* more narrative on intro

* rename intro to index, better SEO

* reorder for clarity

* fixed links

* fixed links

* renamed file for clarity

* added links and consistent title

* typo

* Closes #64, as much as I can imagine.

* results explanation

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* shorter line

* Making ruff happy

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Making ruff happy

* Moved shuffle to an optional keyword. CHECK

* Recovered from 0145e55

* Clearing outputs for notebooks. Should not merge into main been PR is squashed.

* tested to run

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* tested to run

* Update docs/_toc.yml

Co-authored-by: Wei Ji <23487320+weiji14@users.noreply.github.com>

* assume root folder

Co-authored-by: Wei Ji <23487320+weiji14@users.noreply.github.com>

* Update src/model_clay.py

Co-authored-by: Wei Ji <23487320+weiji14@users.noreply.github.com>

* Update src/model_clay.py

Co-authored-by: Wei Ji <23487320+weiji14@users.noreply.github.com>

* Update src/model_clay.py

Co-authored-by: Wei Ji <23487320+weiji14@users.noreply.github.com>

* Update docs/README

Co-authored-by: Wei Ji <23487320+weiji14@users.noreply.github.com>

* Update docs/installation.md

Co-authored-by: Wei Ji <23487320+weiji14@users.noreply.github.com>

* Let pre-commit enforce 512KB file size limit in entire repo

Make sure that large files don't get commited to git. Xref https://github.com/pre-commit/pre-commit-hooks/tree/v4.5.0#check-added-large-files

* Remove extra args.update lines

* Set execute_notebooks to cache

Don't force running all notebooks on the docs build, only run those that don't have output cells already.

* Remove PNG files in docs/assets, replace with web version

Hosting the PNG images directly via GitHub's UI, instead of in the git repo.

* Only build files in toc and rename docs/README to docs/README.md

Don't build files that aren't in the Table of Contents (https://jupyterbook.org/en/stable/structure/configure.html#disable-building-files-that-arent-in-the-table-of-contents). Can then rename README to README.md without raising a warning like `WARNING: document isn't included in any toctree`.

* Use huggingface ckpt, fix header, and rm sample.gif in interpolation nb

Some minor changes to the clay-v0-interpolation.ipynb file, and remove the large sample.gif file. Also gitignoring .gif and .png files.

* Fix some link typos and edit wording on main index page

* Remove run_region notebook

Will be handled in #122

* Fix typos in model specification

Should be 10 bands of Sentinel-2, not 13.

* Rename tutorial notebooks

* Exclude tutorial notebooks from execution during build.

* Make tutorial title consistent

---------

Co-authored-by: SRM <soumya@developmentseed.org>
Co-authored-by: Soumya Ranjan Mohanty <vnn.soumya2@gmail.com>
Co-authored-by: Daniel Wiesmann <daniel@wiesmann.pt>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Wei Ji <23487320+weiji14@users.noreply.github.com>
Co-authored-by: Daniel Wiesmann <yellowcap@users.noreply.github.com>